There are a lot of parallels between that story and this movie!
• The Underbase itself: The Underbase is a collection of the knowledge of the Transformers, somehow amassed into a single mass/energy object that looked like a giant cube, much like the Allspark.
LOOK: http://images.wikia.com/transformers/images/thumb/d/d4/Underbase.jpg/445px-Underbase.jpg
• The "knowledge" thing might not sound that much like the Allspark from the movie, but check out this explanation of the Underbase from #48:
"Within each Transformer is a core of knowledge called a database. Through that portal is something much more fundamental - a collection of knowledge that underlies all databases, much greater and broader in scope than anything in the universe. We call it the Underbase. What you seek is contained within...""
• In the movie Prime explains that the Allspark is too much for any one transformer to possess, and if they put it in their own chest, it might kill them. In the Underbase saga Prime explains:
...discovered that the knowledge contained in the Underbase was too much for any one Transformer to know, and that any attempt to input the Underbase would only lead to "madness.... and death"
• After being fought over by the 'Bots and 'Cons on Cybertron, the Underbase was blasted into space. This same scenario took place in the Prequel comics showing the Allspark being blasted away from Movie-Cybartron.
• Information about the Underbase/Allspark was left on earth a while back... In the comics Grandslam and Raindance ended up in pirate treasure chest (stuck in their tape modes) containing vital Underbase information. Of course it was on the special glasses in the Movie.
• The Underbase was absorbed by Starscream (Since Megatron was already dead at this point in the comics). It gave him amazing power, but eventually made him explode. Of course, a similar thing happened w the Allspark and Megatron.
• Jazz was destroyed in a city in both stories (probably coincidentally)
So... Is all of this a BIG coincidence, or did the writers use the Underbase saga as a jumping off point for the movie?