Small bug

We are aware of the current bug that is in the game where you seem to have your bots always active. I have reported this to Glyph and Seibertron and it should be corrected shortly.

Right now I have found that after you complete missions and it says that your bots are 'Done' but still active click on theCR Chamber. It will show that they are recovering but they are not really.
Click into the Registry and you will find them deactivated, but not in CR anymore. Go back into CR and you should be able put your bots in to be healed.
You can then go back into the registry to active your healthy bots for more battles.

Hopefully this system works for you as it does seem to for me.

The thread for discussion is here.

EDIT: Another method that was mentioned was just simply refreshing the CR Chamber page. It worked for me, and it cuts down on going back and forth.